Man pages for EcoGRAPH/epidemiar
epidemiar: Create EPIDEMIA Environmentally-Mediated Disease Forecasts
| add_datefields | Adds ISO or CDC datefields to a data set with a "obs_date"... |
| anomalize_env | Convert environmental data into anomalies. |
| build_equation | Create the appropriate regression equation. |
| build_model | Build the appropriate model |
| calc_env_anomalies | Calculates and summarizes environmental anomalies in the... |
| calc_skill | Calculate the forecast model skill score compared to the... |
| calc_skill_stat | Calculate model skill comparison statistics |
| calc_val_stats | Calculate validation statistics from forecast results. |
| check_bb_models | Checks that all models successfully built when using... |
| create_epi_summary | Creates summary of disease incidence in early detection... |
| create_named_list | #' Interpolates missing environmental data. #' Deprecated, no... |
| create_predictions | Create the appropriate predictions/forecasts. |
| create_summary_data | Creates early detection and early warning alerts levels for... |
| data_to_daily | Converts non-daily data to daily data, with optional... |
| env_daily_to_ref | Create historical reference data from daily environmental... |
| env_format_fc | Format env data for modeling |
| environ_report_format | Formats environmental data for report timeseries. |
| epi_format_fc | Format epi data for modeling |
| epi_NA_interpolate | Interpolates missing epi data. |
| epiwday | Get epidemiological weekday number of a date-time |
| extend_env_future | Extend environmental data into the future. |
| extend_epi_future | Extend epidemiology dataframe into future. |
| forecast_regression | Run forecast regression |
| format_lag_ca | Formats the environmental data lagged to epidemiology data... |
| format_report_settings | Formats report_settings for including in metadata part of... |
| get_group_validations | Get geographic grouping model validation statistics |
| get_overall_validations | Get overall model validation statistics |
| input_check | Functions to check input to epidemiar and set report settings... |
| lag_environ_to_epi | Lag the environmental data. |
| make_date_yw | Create dates from epidemiological weeks and years |
| make_stss | Make the list of sts objects |
| Mode | Mode |
| pull_model_envvars | Pull only model env variables. |
| run_epidemia | Run EPIDEMIA forecast models and early detection algorithm. |
| run_event_detection | Main subfunction for running event detection algorithm. |
| run_farrington | Run the Farrington early detection algorithm |
| run_forecast | Runs the forecast modeling |
| run_no_detection | Run No outbreak detection algorithm |
| run_validation | Run EPIDEMIA model validation statistics |
| save_geog_validations | Save geographic grouping model validation statistics |
| save_overall_validations | Save overall model validation statistics |
| stss_res_to_output_data | Formats output data from sts result objects |
| truncpoly | Creates a modified b-spline basis (piecewise polynomial). |
