calc_env_anomalies: Calculates and summarizes environmental anomalies in the...

In EcoGRAPH/epidemiar: epidemiar: Create EPIDEMIA Environmentally-Mediated Disease Forecasts

Description

Calculates and summarizes environmental anomalies in the early detection period.

Usage

calc_env_anomalies(env_ts, quo_groupfield, quo_obsfield, report_dates)

Arguments

env_ts	Environmental timeseries dataset as output from environ_report_format().
quo_groupfield	Quosure of the user given geographic grouping field to run_epidemia().
quo_obsfield	Quosure of user given field name of the environmental data variables.
report_dates	Internally generated set of report date information: min, max, list of dates for full report, known epidemiological data period, forecast period, and early detection period.

Value

These data are the recent (during the early detection period) differences (anomalies) of the environmental variable values from the climatology/reference mean. Note: these are not the same as daily environmental anomalies calculated as residuals from GAM in anomalize_env() as part of forecasting.

EcoGRAPH/epidemiar documentation built on Nov. 13, 2020, 5:31 p.m.