environ_report_format: Formats environmental data for report timeseries.

In EcoGRAPH/epidemiar: epidemiar: Create EPIDEMIA Environmentally-Mediated Disease Forecasts

Description

Formats environmental data for report timeseries.

Usage

environ_report_format(
  env_ext_data,
  env_ref_data,
  quo_groupfield,
  quo_obsfield,
  env_used,
  env_info,
  epi_date_type,
  report_dates
)

Arguments

env_ext_data	An environmental dataset extended into the future/forecast period with estimated values for the environmental variables. The env_data_extd object returned by run_forecast().
env_ref_data	Historical averages by week of year for environmental variables. Used in extended environmental data into the future for long forecast time, to calculate anomalies in early detection period, and to display on timeseries in reports.
quo_groupfield	Quosure of the user given geographic grouping field to run_epidemia().
quo_obsfield	Quosure of user given field name of the environmental data variables
env_used	List of environmental variables that were used in the modeling.
env_info	Lookup table for environmental data - reference creation method (e.g. sum or mean), report labels, etc.
epi_date_type	String indicating the standard (WHO ISO-8601 or CDC epi weeks) that the weeks of the year in epidemiological and environmental reference data use ["ISO" or "CDC"]. <<>>
report_dates	Internally generated set of report date information: min, max, list of dates for full report, known epidemiological data period, forecast period, and early detection period.

Value

Data set of multiple timeseries for the used environmental variables during the report period for each geographic unit. Returned as environ_timeseries in the run_epidemia() output.

EcoGRAPH/epidemiar documentation built on Nov. 13, 2020, 5:31 p.m.