View source: R/other_functions.R
Takes in a text file containing list of sample files. Creates an immune distance matrix, containing the distance between all the tumor regions and normal, an immune tree topology file, and an unrooted phylogram.
1 | immune_dendrograms(immune_dendro_list_file)
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immune_dendro_list_file |
A text file containing a list of sample files, one file name per line. Each file contains a matrix with proportion of immune cells (inferred by CIBERSORT) of all immune cell types in each tumor region and normal. |
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