specified_geneset_signature: Runs a signature analysis using a user-supplied geneset
In Elise-Merritt/metaITH: A Tool for Analyzing Intratumor Heterogeneity at Multiple Levels
View source: R/other_functions.R
Description
Takes in a z-score matrix created by function z_score_calculations and a geneset
Outputs a table of geneset scores and a geneset scores heatmap
Usage
1
specified_geneset_signature(z_score_matrix_file, geneset)
Arguments
z_score_matrix_file
A matrix of z-scores for all genes in all tumor samples and regions. Can be created using function z_score_calculations.
geneset
A text file containing a list of genes supplied by the user, one gene per line.
Elise-Merritt/metaITH documentation built on Sept. 13, 2019, 12:57 a.m.
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View source: R/other_functions.R
Description
Takes in a z-score matrix created by function z_score_calculations and a geneset Outputs a table of geneset scores and a geneset scores heatmap
Usage
1 | specified_geneset_signature(z_score_matrix_file, geneset)
|
Arguments
z_score_matrix_file |
A matrix of z-scores for all genes in all tumor samples and regions. Can be created using function z_score_calculations. |
geneset |
A text file containing a list of genes supplied by the user, one gene per line. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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