specified_geneset_signature: Runs a signature analysis using a user-supplied geneset

Description Usage Arguments

View source: R/other_functions.R

Description

Takes in a z-score matrix created by function z_score_calculations and a geneset Outputs a table of geneset scores and a geneset scores heatmap

Usage

1
specified_geneset_signature(z_score_matrix_file, geneset)

Arguments

z_score_matrix_file

A matrix of z-scores for all genes in all tumor samples and regions. Can be created using function z_score_calculations.

geneset

A text file containing a list of genes supplied by the user, one gene per line.


Elise-Merritt/metaITH documentation built on Sept. 13, 2019, 12:57 a.m.