View source: R/other_functions.R
Takes in a text file containing list of sample files. Creates a RNA distance matrix, containing the distance between all the tumor regions and normal, a RNA tree topology file, and a RNA unrooted dendrogram.
1 | rna_dendrograms(rna_phylo_list_file)
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rna_dendro_list_file |
A text file containing a list of sample files, one file name per line. Each file contains a matrix with expression values (preferably log2(TPM+1)) of all the genes in each tumor region and normal. |
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