Man pages for EmilieT/mutcraft
functions to decipher and plot mutation data
| mc.loadVcf | Read one VCF file and create a dataframe |
| mc.loadVcfs | Read VCF files as a list of data frames |
| mc.mutContext | Add context bases to mutations |
| mc.mutRain | Compute distance between mutations for rainfall plots |
| mc.mutSpectrum | Make mutations table |
| mc.plotContext | Plot histogram of the 96 possible mutations |
| mc.plotRain | Plot mutation rainfalls |
| mc.plotSpectrum | Plot mutation spectrum |
| mc.plotSpider | Plot spider spectrum of mutations |
| mc.sumContext | Compute frequencies and proportions of mutations with context |
