Description Usage Arguments Value
Compute frequencies and proportions of mutations with context
1 2 3 | mc.sumContext(mutnet.obj, base.ref.col = "ref.allele",
base.alt.col = "alt.allele", base.3p.col = "base.3p",
base.5p.col = "base.5p", trinuc.pc, symetrize = c(TRUE, FALSE)[1])
|
mutnet.obj |
A dataframe of mutation info |
base.ref.col |
Name of the column with the reference allele in dataframe |
base.alt.col |
Name of the column with the alternative allele in dataframe |
base.3p.col |
Name of the column with the base after the mutation in dataframe |
base.5p.col |
Name of the column with the base before the mutation in dataframe |
trinuc.pc |
Array of the proportion of each trinucleotide in the genome (for normalisation) |
symetrize |
Boolean to symetrize reversable mutations or not |
A dataframe with each mutation and context, with frequencies and proportions
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