mc.mutSpectrum: Make mutations table

In EmilieT/mutcraft: functions to decipher and plot mutation data

Description

Make mutations table

Usage

mc.mutSpectrum(mutnet.obj, col.ref = "ref.allele", col.alt = "alt.allele",
  nuc = c("A", "C", "G", "T"), symetrize = T)

Arguments

mutnet.obj	A dataframe of mutation info
col.ref	Name of the column with the reference alleles
col.alt	Name of the column with the alt alleles
nuc	Array of used nucleotides
symetrize	Boolean to symetrize reversable mutations or not

Value

A table with the counts and proportions of each mutation type

EmilieT/mutcraft documentation built on May 6, 2019, 3:47 p.m.