mc.plotContext: Plot histogram of the 96 possible mutations

In EmilieT/mutcraft: functions to decipher and plot mutation data

Description

Plot histogram of the 96 possible mutations

Usage

mc.plotContext(mutnet, base.ref.col = "ref.allele",
  base.alt.col = "alt.allele", base.3p.col = "base.3p",
  base.5p.col = "base.5p", trinuc.pc, symetrize = c(TRUE, FALSE)[1])

Arguments

mutnet	A list of dataframe with mutations infos for each sample
base.ref.col	Name of the column with the reference allele in dataframe
base.alt.col	Name of the column with the alternative allele in dataframe
base.3p.col	Name of the column with the base after the mutation in dataframe
base.5p.col	Name of the column with the base before the mutation in dataframe
trinuc.pc	Array of the proportion of each trinucleotide in the genome (for normalisation)
symetrize	Boolean to symetrize reversable mutations or not

Value

A ggplot object to plot

EmilieT/mutcraft documentation built on May 6, 2019, 3:47 p.m.