update_biogridr: Update Local BioGRID Database

Description Usage Arguments Details

Description

Update your local BioGRID database with the latest interactions, or previously archived versions of the BioGRID database.

Usage

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update_biogridr(db = getOption("biogridr.db"),
  url = getOption("biogridr.url"))

Arguments

db

Path to an SQLite database. Defaults to getOption('biogridr.db').

url

URL to BIOGRID-ALL-<VERSION>.tab2.zip archive. Defaults to getOption('biogridr.url').

Details

This function downloads a BIOGRID-ALL-<VERSION>.tab2.zip to a temporary file, which is then written to an SQLite database. The default biogridr url (getOption('biogridr.url')) is the latest release.


EricEdwardBryant/biogridr documentation built on May 6, 2019, 4:02 p.m.