Files in EvolEcolGroup/pastclim

Manipulate Time Series of Palaeoclimate Reconstructions

.Rbuildignore

.circleci/config.yml

.github/.gitignore

.github/old/R-CMD-check.yaml

.github/old/pkgdown_temp.yaml

.github/workflows/R-CMD-check.yaml

.github/workflows/pkgdown.yaml

.github/workflows/test-coverage.yaml

.gitignore

CRAN-SUBMISSION

DESCRIPTION

LICENSE.md

NAMESPACE

NEWS.md R/bioclim_vars.R R/check_available_datasets.R R/check_coords_names.R R/check_dataset_path.R R/check_times.R R/check_var_downloaded.R R/check_var_in_nc.R R/clean_data_path.R R/data.R R/datasets_docs.R R/df_from_region_series.R R/df_from_region_slice.R R/distance_from_sea.R R/download_chelsa.R R/download_dataset.R R/download_etopo.R R/download_worldclim_future.R R/download_worldclim_present.R R/get_available_datasets.R R/get_biome_classes.R R/get_data_path.R R/get_dataset_info.R R/get_downloaded_datasets.R R/get_file_for_dataset.R R/get_ice_mask.R R/get_land_mask.R R/get_mis_time_steps.R R/get_sea_level.R R/get_time_steps.R R/get_vars_for_dataset.R R/global.R R/is_region_series.R R/list_available_datasets.R R/load_dataset_list.R R/load_etopo.R R/location_series.R R/location_slice.R R/location_slice_from_region_series.R R/make_binary_mask.R R/make_ice_mask.R R/make_land_mask.R R/pastclim.R R/region_series.R R/region_slice.R R/sample_region_series.R R/sample_region_slice.R R/set_data_path.R R/slice_region_series.R

R/sysdata.rda

R/time_bp.R R/time_bp_to_i_series.R R/time_bp_to_index.R R/update_dataset_list.R R/validate_nc.R R/var_labels.R R/ybp2date.R R/zzz.R README.md

_pkgdown.yml

codecov.yml

cran-comments.md

data-raw/.gitignore

data-raw/benchmark/benchmark.R

data-raw/data_files/continent_outlines.csv

data-raw/data_files/dataset_list_included.csv

data-raw/data_files/internal_seas/Caspian_sea.cpg

data-raw/data_files/internal_seas/Caspian_sea.dbf

data-raw/data_files/internal_seas/Caspian_sea.prj

data-raw/data_files/internal_seas/Caspian_sea.qpj

data-raw/data_files/internal_seas/Caspian_sea.shp

data-raw/data_files/internal_seas/Caspian_sea.shx

data-raw/data_files/internal_seas/azov_sea.cst

data-raw/data_files/internal_seas/azov_sea.dbf

data-raw/data_files/internal_seas/azov_sea.prj

data-raw/data_files/internal_seas/azov_sea.shp

data-raw/data_files/internal_seas/azov_sea.shx

data-raw/data_files/internal_seas/black_sea.cst

data-raw/data_files/internal_seas/black_sea.dbf

data-raw/data_files/internal_seas/black_sea.prj

data-raw/data_files/internal_seas/black_sea.shp

data-raw/data_files/internal_seas/black_sea.shx

data-raw/data_files/internal_seas/metadata_for_internal_seas

data-raw/data_files/shapefiles_internal_seas.zip

data-raw/data_files/spratt2016.txt

data-raw/data_files/worldclim_future_list.csv

data-raw/data_files/worldclim_future_template.csv

data-raw/helper_functions/check_returns_in_documentation.R data-raw/helper_functions/submitting_to_cran.R data-raw/helper_functions/verify_completeness_of_variables.R data-raw/helper_functions/verify_files_by_dataset.R data-raw/make_data/dataset_list_included.R data-raw/make_data/mis_boundaries.R data-raw/make_data/region_extent.R data-raw/make_data/region_outlines.R data-raw/make_extdata/internal_seas.R data-raw/make_extdata/make_dataset_list_for_wc_future.R data-raw/readme.md data-raw/to_update/create_example_dataset.R data-raw/to_update/downsample_CHELSA_TraCE21k_tiff.R data-raw/to_update/extract_topography_for_beyer2020_part1.R

data-raw/to_update/extract_topography_for_beyer2020_part2.sh

data-raw/to_update/extract_topography_for_beyer2020_rewrite.R data-raw/to_update/extract_topography_for_krapp2021_part1.R

data-raw/to_update/extract_topography_for_krapp2021_part2.sh

data-raw/to_update/repackage_beyer2020 rewrite.R

data-raw/to_update/repackage_beyer2022h.sh

data-raw/to_update/repackage_beyer2022h_split_annual_monthly.R data-raw/to_update/repackage_krapp2021.R

data-raw/to_update/repackage_krapp2021.sh

data-raw/to_update/repackage_krapp2021_monthly.R data-raw/to_update/rewrite_global_attributes.R

data-raw/to_update/superseded/create_example_dataset.sh

data-raw/to_update/superseded/create_internal_seas_raster.R data-raw/to_update/superseded/recompute_bio15_for_Beyer2020.R

data-raw/to_update/superseded/repackage_beyer2020.sh

data-raw/to_update/superseded/repackage_beyer2020_split_annual_monthly.R data-raw/to_update/update_meta_data_of_vars_in_nc.R

data-raw/to_update/update_metadata_nc_in_dir.sh

data/mis_boundaries.rda

data/region_extent.rda

data/region_outline.rda

data/region_outline_union.rda

inst/CITATION

inst/WORDLIST

inst/extdata/CHELSA_bio01/CHELSA_TraCE21k_bio01_-1_V1.0.small.tif

inst/extdata/CHELSA_bio01/CHELSA_TraCE21k_bio01_-2_V1.0.small.tif

inst/extdata/CHELSA_bio01/CHELSA_TraCE21k_bio01_-3_V1.0.small.tif

inst/extdata/delta/prec_obs_hres_all.nc

inst/extdata/delta/prec_series.nc

inst/extdata/delta/relief.nc

inst/extdata/delta/tavg_obs_hres_all.nc

inst/extdata/delta/tavg_series.nc

inst/extdata/example_climate_v1.3.0.nc

inst/extdata/internal_seas.RDS

inst/extdata/sea_level_spratt2016.txt

man/Barreto2023.Rd man/Beyer2020.Rd man/Example.Rd man/HYDE_3.3_baseline.Rd man/Krapp2021.Rd man/WorldClim_2.1.Rd man/bioclim_vars-methods.Rd man/check_available_dataset.Rd man/check_available_variable.Rd man/check_coords_names.Rd man/check_dataset_path.Rd man/check_time_vars.Rd man/check_var_downloaded.Rd man/check_var_in_nc.Rd man/clean_data_path.Rd man/climate_for_locations.Rd man/climate_for_time_slice.Rd man/copy_example_data.Rd man/df_from_region_series.Rd man/df_from_region_slice.Rd man/distance_from_sea.Rd man/dot-cv.Rd man/download_chelsa.Rd man/download_dataset.Rd man/download_etopo.Rd man/download_worldclim_future.Rd man/download_worldclim_present.Rd

man/figures/logo.png

man/figures/logo_large.png

man/get_available_datasets.Rd man/get_biome_classes.Rd man/get_data_path.Rd man/get_dataset_info.Rd man/get_downloaded_datasets.Rd man/get_file_for_dataset.Rd man/get_ice_mask.Rd man/get_land_mask.Rd man/get_mis_time_steps.Rd man/get_sea_level.Rd man/get_time_bp_steps.Rd man/get_varname.Rd man/get_vars_for_dataset.Rd man/help_console.Rd man/is_region_series.Rd man/list_available_datasets.Rd man/load_dataset_list.Rd man/load_etopo.Rd man/location_series.Rd man/location_slice.Rd man/location_slice_from_region_series.Rd man/make_binary_mask.Rd man/make_ice_mask.Rd man/make_land_mask.Rd man/mis_boundaries.Rd man/mode.Rd man/pastclim.Rd man/region_extent.Rd man/region_outline.Rd man/region_outline_union.Rd man/region_series.Rd man/region_slice.Rd man/sample_region_series.Rd man/sample_region_slice.Rd man/sample_rs_fixed.Rd man/sample_rs_variable.Rd man/set_data_path.Rd man/slice_region_series.Rd man/time_bp.Rd man/time_bp_to_i_series.Rd man/time_bp_to_index.Rd man/time_series_for_locations.Rd man/update_dataset_list.Rd man/validate_nc.Rd man/var_labels.Rd man/ybp2date.Rd pkgdown/assets/pastclim_cheatsheet.pdf

pkgdown/favicon/apple-touch-icon-120x120.png

pkgdown/favicon/apple-touch-icon-152x152.png

pkgdown/favicon/apple-touch-icon-180x180.png

pkgdown/favicon/apple-touch-icon-60x60.png

pkgdown/favicon/apple-touch-icon-76x76.png

pkgdown/favicon/apple-touch-icon.png

pkgdown/favicon/favicon-16x16.png

pkgdown/favicon/favicon-32x32.png

pkgdown/favicon/favicon.ico

tests/spelling.R tests/testthat.R tests/testthat/test_check_dataset_path.R tests/testthat/test_check_time_vars.R tests/testthat/test_clean_data_path.R tests/testthat/test_df_from_region_series.R tests/testthat/test_df_from_region_slice.R tests/testthat/test_distance_from_sea.R tests/testthat/test_download_dataset.R tests/testthat/test_get_available_dataset.R tests/testthat/test_get_biome_classes.R tests/testthat/test_get_downloaded_datasets.R tests/testthat/test_get_file_for_dataset.R tests/testthat/test_get_ice_mask.R tests/testthat/test_get_land_mask.R tests/testthat/test_get_mis_time_steps.R tests/testthat/test_get_set_data_path.R tests/testthat/test_get_time_steps.R tests/testthat/test_get_vars_for_dataset.R tests/testthat/test_is_region_series.R tests/testthat/test_load_dataset_list.R tests/testthat/test_location_series.R tests/testthat/test_location_slice.R tests/testthat/test_location_slice_from_region_series.R tests/testthat/test_region_series.R tests/testthat/test_region_slice.R tests/testthat/test_remote_files.R tests/testthat/test_sample_region_series.R tests/testthat/test_sample_region_slice.R tests/testthat/test_slice_region_series.R tests/testthat/test_time_bp.R tests/testthat/test_time_bp_series.R tests/testthat/test_validate_nc.R tests/testthat/test_var_labels.R tests/testthat/test_ybp2date.R

vignettes/.gitignore

vignettes/a0_pastclim_overview.Rmd vignettes/a1_available_datasets.Rmd vignettes/a2_custom_datasets.Rmd vignettes/a3_pastclim_present_and_future.Rmd

EvolEcolGroup/pastclim documentation built on Nov. 6, 2023, 5:11 a.m.