FabianErdel/RWire: Identification of co-regulated genomic regions based on correlation analysis
Version 0.0.0.9000

This package generates accessibility matrices based on single-cell ATAC-seq data, and calculates correlation matrices for all combinations of genomic regions. Regions with high correlation coefficients tend to have similar accessibility in the same set of cells, indicating that these regions are (directly or indirectly) co-regulated.

Getting started

Package details

Maintainer
LicenseGPL
Version0.0.0.9000
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("FabianErdel/RWire")
FabianErdel/RWire documentation built on July 25, 2018, 8:36 p.m.