countReads: This function counts reads in a GRanges object that fall into...
In FabianErdel/RWire: Identification of co-regulated genomic regions based on correlation analysis
Description
Usage
Arguments
Value
Description
This function counts reads in a GRanges object that fall into a list of ROIs
Usage
1
countReads(data, rois, mino = 15, ignore_strand = TRUE, chr = 0)
Arguments
data
GRanges object containing reads
rois
GRanges object containing ROIs
mino
Minimum overlap (see package 'GenomicRanges')
ignore_strand
When set to TRUE, the strand information is ignored in the overlap calculations (see package 'GenomicRanges')
chr
Chromosome number. When set to 0, all chromosomes will be considered.
Value
GRanges object containing read counts in ROIs
FabianErdel/RWire documentation built on May 26, 2019, 7:26 a.m.
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Description Usage Arguments Value
Description
This function counts reads in a GRanges object that fall into a list of ROIs
Usage
1 | countReads(data, rois, mino = 15, ignore_strand = TRUE, chr = 0)
|
Arguments
data |
GRanges object containing reads |
rois |
GRanges object containing ROIs |
mino |
Minimum overlap (see package 'GenomicRanges') |
ignore_strand |
When set to TRUE, the strand information is ignored in the overlap calculations (see package 'GenomicRanges') |
chr |
Chromosome number. When set to 0, all chromosomes will be considered. |
Value
GRanges object containing read counts in ROIs
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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