Man pages for FabianErdel/RWire
Identification of co-regulated genomic regions based on correlation analysis

compareCorCoeffsThis function returns p-values assessing the difference...
compareCorDistributionsThis function returns p-values assessing the difference...
countReadsThis function counts reads in a GRanges object that fall into...
getAccLUTThis function makes a color LUT for accessibility matrices
getCIsThis function returns confidence intervals
getCorLUTThis function makes a color LUT for correlation matrices
getCorRangesThis function returns bootstrapped correlation coefficients
makeAccMatrixThis function makes accessibility matrices from a set of BED...
makeCorMatrixThis function makes correlation matrices from accessibility...
makeCrossCorMatrixThis function makes cross correlation matrices from different...
makeGenomeTilesThis function makes tiles for the complete hg19 genome
makeIPCHistThis function makes a histogram for the number of...
makeIPCStatsCalculate statistics for the number of integrations per cell
makeIPRHistThis function makes a histogram for the number of cells with...
makeIPRStatsCalculate statistics for the number of integrations per ROI
makeTilesThis function makes tiles for a particular chromosome of the...
readBedThis function reads a BED file and stores the reads in a...
saveImageThis function saves a matrix as an image
scaleAccMatrixThis function scales accessibility matrices to genomic...
scaleCorMatrixThis function scales correlation matrices to genomic...
writeMatrixWrapper for making and storing scaled corrleation matrices...
FabianErdel/RWire documentation built on July 25, 2018, 8:36 p.m.