In FanqianYin/omicstoolkits: Integrated bioinformatics toolkits for quantitative omics data analysis

knitr::opts_chunk$set(echo = TRUE)

Main toolkits to be developed

1. Consensus differential expression analysis

2. Network analysis

3. Regression analysis

4. Time serie anaylsis

5. Data pre-processing missing value (filtering, imputation) data normalization remove batch effect

6. Bio-marker analysis

Consensus differential expression analysis

1. Support subset of clustering methods
2. add more clustering algorithms: SOM, NMF,
3. clusters alignment (cluster label result from different methods are consistent).
4. Complement of consensus cluster result, like dbscan...
5. Relationship between clusters and phenotype data. Correlation, Fisher exact test...
6. Feature selection.
7. Can change consensus.method when using plot_consensus_cluster.heatmap().

FanqianYin/omicstoolkits documentation built on Jan. 3, 2022, 5:57 p.m.