Files in FeifeiXiaoUSC/FLCNA

Simultaneous CNV Detection And Subclone Clustering With Single Cell Sequencing Data

Analysis/Real data analysis/Pair_bamtocoverage.R Analysis/Real data analysis/Real data network analysis prepare.R Analysis/Simulations/HMMcopy/Ddel_Sshort.R Analysis/Simulations/HMMcopy/Ddel_long.R Analysis/Simulations/HMMcopy/Ddel_medium.R Analysis/Simulations/HMMcopy/Ddel_short.R Analysis/Simulations/HMMcopy/Ddup_Sshort.R Analysis/Simulations/HMMcopy/Ddup_long.R Analysis/Simulations/HMMcopy/Ddup_medium.R Analysis/Simulations/HMMcopy/Ddup_short.R Analysis/Simulations/HMMcopy/mix_Sshort.R Analysis/Simulations/HMMcopy/mix_long.R Analysis/Simulations/HMMcopy/mix_medium.R Analysis/Simulations/HMMcopy/mix_short.R Analysis/Simulations/SCOPE/Ddel_Sshort.R Analysis/Simulations/SCOPE/Ddel_long.R Analysis/Simulations/SCOPE/Ddel_medium.R Analysis/Simulations/SCOPE/Ddel_short.R Analysis/Simulations/SCOPE/Ddup_Sshort.R Analysis/Simulations/SCOPE/Ddup_long.R Analysis/Simulations/SCOPE/Ddup_medium.R Analysis/Simulations/SCOPE/Ddup_short.R Analysis/Simulations/SCOPE/mix_Sshort.R Analysis/Simulations/SCOPE/mix_long.R Analysis/Simulations/SCOPE/mix_medium.R Analysis/Simulations/SCOPE/mix_short.R Analysis/Simulations/Simulation_3_clusters.R Analysis/Simulations/Simulation_5_clusters.R Analysis/Simulations/Simulation_5_clusters_varied_CNAs.R R/CNVcluster.R R/FLCNA.R R/FLCNA_LQA.R R/FLCNA_QC.R R/FLCNA_normalization.R R/RcppExports.R R/additional_fn.R R/gausianMixture.R R/nopenalty.R README.md man/CNA.out.Rd man/CNAcluster.Rd man/CorrectGC.Rd man/CorrectMAP.Rd man/CorrectSize.Rd man/FLCNA.Rd man/FLCNA_LQA.Rd man/FLCNA_QC.Rd man/FLCNA_normalization.Rd man/FLCNA_normalization_ref.Rd man/count.mu.Rd man/dmvnorm_log.Rd man/flowCalcCpp.Rd man/gausianMixture.Rd man/getState.Rd man/nopenalty.Rd man/updateEM.Rd reference-manual.pdf vignettes/FLCNA.Rmd vignettes/FLCNA.pdf