FLCNA_normalization_ref: FLCNA normalization with reference

In FeifeiXiaoUSC/FLCNA: Simultaneous CNV Detection And Subclone Clustering With Single Cell Sequencing Data

FLCNA normalization with reference

Description

Normalization function used in FLCNA.

Usage

FLCNA_normalization_ref(Y, bin_size = 1e+05, gc, map, ref_id)

Arguments

Y	A p-dimensional data matrix. Each row is an observation.
bin_size	The bin size used in the data the default is 100,000.
gc	A p-dimensional vector with gc concent.
map	A p-dimensional vector with mappability.
ref_id	cells used as reference.

Value

The log2Rdata used for main step for the FLCNA method.

FeifeiXiaoUSC/FLCNA documentation built on March 29, 2025, 10:48 p.m.