API for FelixErnst/Structstrings
Implementation of the dot bracket annotations with Biostrings

Global functions
.BStringSetToDotBracketStringSet Source code
.BStringToDotBracketString Source code
.BStringToDotBracketStringSet Source code
.CSDataFrameList_To_CSDotBracketDataFrameList Source code
.DataFrame_To_DotBracketDataFrame Source code
.DotBracketStringSet.show_frame Source code
.DotBracketStringSet.show_frame_line Source code
.DotBracketStringSetToIntegerList Source code
.IntegerListToDotBracketStringSet Source code
.SimpleDataFrameList_To_DotBracketDataFrameList Source code
.SimpleSplitDataFrameList_To_SimpleSplitDotBracketDataFrameList Source code
.add_DotBracket_colors Source code
.adjust_DotBracketDataFrame_col_types Source code
.check_for_dbtype_dbdf Source code
.check_for_dbtype_string Source code
.check_for_invalid_db_letters Source code
.check_for_invalid_db_values Source code
.check_matched_postions Source code
.convert_char_type_to_character Source code
.convert_db_annotation Source code
.flatten_input_list Source code
.get_db_types Source code
.get_dot_bracket Source code
.get_idx_of_loops_from_dbdfl Source code
.get_idx_of_loops_from_dbs Source code
.get_pairing Source code
.integerToDotBracketString Source code
.integerToDotBracketStringSet Source code
.is_a_bool Source code
.needs_letters_normalized Source code
.norm_DotBracketDataFrame_input Source code
.norm_bracket_type Source code
.norm_dbdf_bracket_type Source code
.norm_letters Source code
.normarg_structure Source code
.onLoad Source code
.onUnload Source code
.pos_letters Source code
.read_StructuredXStringSet Source code
.rename_unnamed_args Source code
.str_replace_all_custom Source code
.subseq Source code
.toSeqSnippet Source code
.valid.DotBracketDataFrame Source code
.valid.DotBracketDataFrameList Source code
.valid.DotBracketString Source code
.valid.DotBracketStringSet Source code
.valid.LoopIndexList Source code
.valid.StructuredXStringSet Source code
CompressedSplitDotBracketDFrameList-class Man page
CompressedSplitDotBracketDataFrameList-class Man page
DB Man page Source code
DBDF Man page Source code
DBDFL Man page Source code
DBS Man page Source code
DBSL Man page Source code
DOTBRACKET_ALPHABET Man page
DOTBRACKET_CHAR_VALUES Man page
DotBracketDFrame-class Man page
DotBracketDFrameList-class Man page
DotBracketDataFrame Man page Source code
DotBracketDataFrame-class Man page
DotBracketDataFrameList Man page Source code
DotBracketDataFrameList-class Man page
DotBracketString Man page Source code
DotBracketString-class Man page
DotBracketStringSet Man page Source code
DotBracketStringSet-class Man page
DotBracketStringSet-io Man page
DotBracketStringSetList Man page Source code
DotBracketStringSetList-class Man page
LoopIndexList Man page Source code
LoopIndexList-class Man page
SDBDFL Man page Source code
STRUCTURE_CLOSE_CHR Man page
STRUCTURE_NEUTRAL_CHR Man page
STRUCTURE_OPEN_CHR Man page
SimpleSplitDotBracketDFrameList-class Man page
SimpleSplitDotBracketDataFrameList-class Man page
SplitDotBracketDataFrameList Man page Source code
Structstrings Man page
Structstrings-data Man page
Structstrings-internals Man page
StructuredRNAStringSet Man page Source code
StructuredRNAStringSet-class Man page
StructuredXStringSet Man page Source code
[<-,DotBracketDataFrame-method Man page
add_colors Source code
alphabet,DotBracketString-method Man page
colnames<-,CompressedSplitDotBracketDataFrameList-method Man page
convertAnnotation Man page
convertAnnotation,DotBracketString-method Man page
convertAnnotation,DotBracketStringSet-method Man page
convertAnnotation,DotBracketStringSetList-method Man page
dbs Man page
dotbracket Man page
dotbracket,StructuredXStringSet-method Man page
dotbracket<- Man page
dotbracket<-,StructuredXStringSet-method Man page
encoding,DotBracketString-method Man page
getBasePairing Man page
getBasePairing,DotBracketString-method Man page
getBasePairing,DotBracketStringSet-method Man page
getBasePairing,StructuredXStringSet-method Man page
getDotBracket Man page
getDotBracket,CompressedSplitDotBracketDataFrameList-method Man page
getDotBracket,DotBracketDataFrame-method Man page
getDotBracket,DotBracketDataFrameList-method Man page
getDotBracket,SimpleSplitDotBracketDataFrameList-method Man page
getLoopIndices Man page
getLoopIndices,CompressedSplitDotBracketDataFrameList-method Man page
getLoopIndices,DotBracketDataFrame-method Man page
getLoopIndices,DotBracketDataFrameList-method Man page
getLoopIndices,DotBracketString-method Man page
getLoopIndices,DotBracketStringSet-method Man page
getLoopIndices,SimpleSplitDotBracketDataFrameList-method Man page
getLoopIndices,StructuredXStringSet-method Man page
make_DOTBRACKET_COLORED_LETTERS Source code
nseq Man page
readDotBracketStringSet Man page Source code
readStructuredRNAStringSet Man page Source code
saveDotBracketStringSet Man page Source code
seqtype,DotBracketString-method Man page
subseq,DotBracketString-method Man page
subseq<-,DotBracketString-method Man page
subseq<-,DotBracketStringSet-method Man page
writeDotBracketStringSet Man page Source code
writeStructuredXStringSet Man page Source code
FelixErnst/Structstrings documentation built on Dec. 15, 2020, 6:19 p.m.