LoopIndexList: LoopIndexList: base pairing information as a list of integer...

In FelixErnst/Structstrings: Implementation of the dot bracket annotations with Biostrings

LoopIndexList: base pairing information as a list of integer values

Description

With loop indeces base pairing information can be represented by giving each base pair a number and increasing/decreasing it with each opened/closed base pair. This information can be used for further analysis of the represented structure.

Usage

LoopIndexList(...)

Arguments

...	the integer input vectors.

Value

a LoopIndexList object.

Examples

# if the object is create manually make sure it is a valid structure
# information. Otherwise an error is thrown.
lil <- LoopIndexList(list(c(1L,2L,3L,3L,3L,2L,1L,0L,5L,6L,6L,5L),
                       c(1L,2L,2L,2L,2L,2L,1L,0L,5L,6L,6L,5L)))

FelixErnst/Structstrings documentation built on March 26, 2024, 9:29 p.m.