API for FellouMada/rSNPdata
R package for Analysis of P. falciparum whole genome SNPs data
| Global functions | |
|---|---|
| add_metadata | Source code |
| calculateMissingness | Source code |
| calculatePopAlleleFreq | Source code |
| calculate_Fws | Man page Source code |
| calculate_IBS | Man page Source code |
| calculate_LD | Man page Source code |
| calculate_iR | Man page Source code |
| calculate_relatedness | Man page Source code |
| calculate_wcFst | Man page Source code |
| compute_MAF | Man page Source code |
| compute_rhat_hmm | Source code |
| constructGenotypeFile | Source code |
| createRelatednessMatrix | Source code |
| drop_samples | Man page Source code |
| drop_snps | Man page Source code |
| filter_snps_samples | Man page |
| gen_mles | Source code |
| gene_annotation | Source code |
| get.pvalue | Source code |
| getGenotypes | Source code |
| getMaf | Source code |
| get_clean_name | Source code |
| get_gene_annotation | Source code |
| get_snpdata | Man page Source code |
| haplotypeToGenotype | Source code |
| impute | Source code |
| impute_missing_genotypes | Man page Source code |
| loglikelihood | Source code |
| loglikelihood_cpp | Source code |
| make_map | Source code |
| make_ped | Source code |
| phaseData | Source code |
| phase_mixed_genotypes | Man page Source code |
| populationLevelAlleleFrequency | Source code |
| print.SNPdata | Man page Source code |
| remove_samples_from_vcf | Source code |
| remove_snps_from_vcf | Source code |
| rm.prf1 | Source code |
| rm.prf2 | Source code |
| rm.suf | Source code |
| run_2country | Source code |
| run_country | Source code |
| select_chrom | Man page Source code |
| simulate_Ys_hmm | Source code |
| simulate_data | Source code |
