compute_MAF: Calculate minor allele frequency (MAF)
In FellouMada/rSNPdata: R package for Analysis of P. falciparum whole genome SNPs data
compute_MAF R Documentation
Calculate minor allele frequency (MAF)
Description
Uses the SNPdata object to calculate the MAF at every loci
Usage
snpdata = compute_MAF(snpdata, include.het=FALSE, mat.name="GT")
Arguments
snpdata
a SNPdata object
include.het
whether to account for the heterozygous allele or not. this is only used when mat.name="GT"
mat.name
the name of the matrix to use. default is "GT"
Details
if include.het=FALSE, the mixed allele will not be considered in the MAF calculation
FellouMada/rSNPdata documentation built on June 12, 2022, 7:29 p.m.
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| compute_MAF | R Documentation |
Calculate minor allele frequency (MAF)
Description
Uses the SNPdata object to calculate the MAF at every loci
Usage
snpdata = compute_MAF(snpdata, include.het=FALSE, mat.name="GT")
Arguments
snpdata |
a SNPdata object |
include.het |
whether to account for the heterozygous allele or not. this is only used when mat.name="GT" |
mat.name |
the name of the matrix to use. default is "GT" |
Details
if include.het=FALSE, the mixed allele will not be considered in the MAF calculation
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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