calculate_iR: Calculate iR index to detect loci with excess of IBD sharing

In FellouMada/rSNPdata: R package for Analysis of P. falciparum whole genome SNPs data

Calculate iR index to detect loci with excess of IBD sharing

Description

Calculate iR index to detect loci with excess of IBD sharing

Usage

snpdata = calculate_iR(snpdata, mat.name="Phased", family="Location", number.cores=4)

Arguments

snpdata	SNPdata object
mat.name	the name of the genotype table to be used. default="Phased"
family	the name of the column, in the metadata table, to be used to represent the sample's population
number.cores	the number of cores to be used. default=4

Value

SNPdata object with an extra field: iR

FellouMada/rSNPdata documentation built on June 12, 2022, 7:29 p.m.