calculate_Fws: Calculate the complexity of infection in every sample (Fws)
In FellouMada/rSNPdata: R package for Analysis of P. falciparum whole genome SNPs data
calculate_Fws R Documentation
Calculate the complexity of infection in every sample (Fws)
Description
Fws is the within host genetic diversity
Usage
snpdata = calculate_Fws(snpdata)
Arguments
snpdata
a SNPdata object
Value
a SNPdata object with an additional column in the meta table
Fws: within host genetic diversity value
COI: the complexity of infection: 1 for Fws>0.95, 2 for Fws<=0.95
FellouMada/rSNPdata documentation built on June 12, 2022, 7:29 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| calculate_Fws | R Documentation |
Calculate the complexity of infection in every sample (Fws)
Description
Fws is the within host genetic diversity
Usage
snpdata = calculate_Fws(snpdata)
Arguments
snpdata |
a SNPdata object |
Value
a SNPdata object with an additional column in the meta table
Fws: within host genetic diversity value
COI: the complexity of infection: 1 for Fws>0.95, 2 for Fws<=0.95
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.