Man pages for Fjeanneret/multiSight
Multi-omics Classification, Functional Enrichment and Network Inference analysis
| assessPerformance_Biosigner | MLmodels biosigner function |
| assessPerformance_Diablo | MLmodels diablo function |
| biosignerRes | Biosigner results |
| buildFeatTable | Models util function |
| convertToEntrezid | Understand utils function |
| correlationNetworkInference | Correlation network inference |
| deseqRes | multiSight results |
| diabloRes | Diablo results |
| enrichResList | multiSight results |
| enrichWP | Util function From clusterProfiler |
| getDataSelectedFeatures | Select only data values from diablo features selected. |
| mod_hypothesisGenerator_server | hypothesisGenerator Server Function |
| mod_understand_server | understand Server Function |
| mod_understand_ui | understand UI Function |
| mod_user_input_server | user_input Server Function |
| mutualInformationNI | Mutual Information network inference |
| omic2 | Multi-omic data with 2 omics. |
| partialCorrelationNI | Partial Correlation network inference |
| pubmedInsight | Select only data values from diablo features selected. |
| run_app | Run the Shiny Application |
| runFeatureNumberTuning | diablo util function |
| runMultiDeseqAnalysis | Enrichment function |
| runMultiEnrichment | Main understand module function |
| runMultiEnrichment_result | multiSight results |
| runSPLSDA | MLmodels diablo function |
| runSVMRFmodels_Biosigner | MLmodels biosigner function |
| splitDatatoTrainTest | MLmodels util function |
| stoufferTable | Stouffer's p-value computing with all pvalues from all... |
