runMultiDeseqAnalysis: Enrichment function

In Fjeanneret/multiSight: Multi-omics Classification, Functional Enrichment and Network Inference analysis

Enrichment function

Description

Runs DESEQ2 analysis on all omic data blocks.

Usage

runMultiDeseqAnalysis(omicDataList, padjUser)

Arguments

omicDataList	List of omic data blocks with Y class vector.
padjUser	Threshold for p-value adjusted to select features according to padj values in DESeq2 table.

Value

List of DESeq2's Differential Expression tables for all omic datasets (e.g. BaseMean, Log2FoldChange, padj columns).

Examples

data("omic2", package = "multiSight")
#deseqRes <- runMultiDeseqAnalysis(omic2, 0.05)
data("deseqRes", package = "multiSight")
print(deseqRes$DEtable$rnaRead)

Fjeanneret/multiSight documentation built on April 6, 2022, 7:59 a.m.