run_deseq2_guides: A function to calculate DESeq2 log-fold changes for sgRNA...
In FloWuenne/cropseq.analysis:
Description
Usage
Arguments
Examples
Description
This function takes as input a table containing the gRNA sequences and will output a .fasta and a .gtf file \
containing the merged plasmid + gRNA sequences and the gtf description to add them to a reference genome.
Usage
1
2
run_deseq2_guides(design_matrix, sgRNA_count_table,
design_column = "distribution")
Arguments
sgRNA_table
The table containing the sgRNA sequences and annotation.
Examples
1
run_deseq2_on_guides()
FloWuenne/cropseq.analysis documentation built on May 27, 2019, 3:29 p.m.
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Description Usage Arguments Examples
Description
This function takes as input a table containing the gRNA sequences and will output a .fasta and a .gtf file \ containing the merged plasmid + gRNA sequences and the gtf description to add them to a reference genome.
Usage
1 2 | run_deseq2_guides(design_matrix, sgRNA_count_table,
design_column = "distribution")
|
Arguments
sgRNA_table |
The table containing the sgRNA sequences and annotation. |
Examples
1 | run_deseq2_on_guides()
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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