buildDotPlotDataFrame: Build up dataframe for plotting dot plot with ggplot2

In FrankD/nethet: A bioconductor package for high-dimensional exploration of biological network heterogeneity

Description

Internal function

Usage

buildDotPlotDataFrame(net.clustering, cluster.names, node.names)

Arguments

net.clustering	Clustering
cluster.names	Cluster names
node.names	Node names

Value

A data frame for plotting the dotPlot with ggplot2 is returned. Column P.Corr contains the partial correlations of each edge as a numeric, column Mean contains the minimum mean expression of the two proteins (e.g. if the edge is e(p1, p2), then the column contains min(mean(p1), mean(p2))), column Edge contains the name of the edge as a character string of the form "p1-p2" and column Type contains the cluster name of the cluster that the edge belongs to as a character string.

FrankD/nethet documentation built on Oct. 5, 2020, 8:22 a.m.