Files in FranzKrah/rGUIDANCE
rGUIDANCE – alignment confidence score computation in R
.DS_Store
.Rbuildignore
.Rhistory
.Rproj.user/897EC1F0/console06/INDEX001
.Rproj.user/897EC1F0/cpp-complilation-config
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.gitattributes
.gitignore
DESCRIPTION
LICENSE.md
NAMESPACE
R/HoT.R
R/HoT_in_GUIDANCE2.R
R/RGUIDANCE-package.R
R/RcppExports.R
R/add_msa.R
R/align_part_set.R
R/filterMSA.R
R/guidance.R
R/guidance2.R
R/guidanceAA-class.R
R/guidanceAA.R
R/guidanceDNA-class.R
R/guidanceDNA.R
R/guidanceSA.R
R/msaBP.R
R/msaBP_nj_tree.R
R/msa_recode.R
R/msa_set_scoreR.R
R/partitions.R
R/res_pair_hit.R
R/rev_DNA.R
R/scores.R
README.md
dep/HoT.R
dep/guidance.R
dep/guidance2.R
dep/msa_set_scoreSA.R
dev/.DS_Store
dev/raxml2.R
inst/.DS_Store
inst/CITATION
inst/extdata/BB30015.fasta
inst/extdata/cl0.fas
man/HoT.Rd
man/addMSA.Rd
man/filterMSA.Rd
man/guidance.Rd
man/guidance2.Rd
man/guidanceAA-class.Rd
man/guidanceAA.Rd
man/guidanceDNA-class.Rd
man/guidanceDNA.Rd
man/initCounter.Rd
man/msa_set_score.Rd
man/recodeMSA.Rd
man/rev_DNA.Rd
man/scores.Rd
paper.bib
paper.md
paper_fig1_accuracy.png
paper_fig2_example.png
rGUIDANCE.Rproj
src/.DS_Store
src/RcppExports.cpp
src/RcppExports.o
src/rGUIDANCE.so
src/score_calculation.cpp
src/score_calculation.o
vignettes/.DS_Store
vignettes/Phylogeny_pipeline.Rmd
vignettes/Phylogeny_pipeline.html
