cromwell_logs: Gets logs for a workflow in Cromwell

In FredHutch/fh.wdlR: Convenience Tools for Managing WDL Workflows via Cromwell

Gets logs for a workflow in Cromwell

Description

Gets logs for a workflow in Cromwell

Usage

cromwell_logs(workflow_id, url = cw_url(), token = NULL)

Arguments

workflow_id	(character) A single workflow ID
url	(character) base url for your Cromwell server. optional. if not supplied set the url as the env var CROMWELLURL
token	(character) we do not recommend passing your token here as a string. Either pass it using Sys.getenv() or save your token as the env var PROOF_TOKEN and then passing nothing to this param and we'll find it

Value

a tibble with a variable number of forws; with columns:

• callName (chr)

• stderr (chr)

• stdout (chr)

• attempt (chr)

• shardIndex (chr)

• workflow_id (chr)

Important

Requires valid Cromwell server URL to be set. See cromwell_settings

Author(s)

Amy Paguirigan, Scott Chamberlain

FredHutch/fh.wdlR documentation built on Sept. 23, 2024, 7:43 a.m.