cromwell_submit_batch: Submit a workflow job to Cromwell
In FredHutch/fh.wdlR: Convenience Tools for Managing WDL Workflows via Cromwell

cromwell_submit_batch

R Documentation

Submit a workflow job to Cromwell

Description

Supports the submission of a fully defined workflow job to a Cromwell instance.

Usage

cromwell_submit_batch(
  wdl,
  batch = NULL,
  params = NULL,
  options = NULL,
  labels = NULL,
  dependencies = NULL,
  url = cw_url(),
  token = NULL
)

Arguments

`wdl`	Local path to the wdl file describing the workflow. (Required)
`batch`	Local path to the json containing a reference to any batch file desired if the workflow is a batch. (Optional)
`params`	Local path to the json containing the parameters to use with the workflow. (Optional)
`options`	Local path to the json containing workflow options to apply. (Optional)
`labels`	A data frame containing the labels for this workflow. (Optional)
`dependencies`	A zip'd file of subworkflow dependencies. (Optional)
`url`	(character) base url for your Cromwell server. optional. if not supplied set the url as the env var `CROMWELLURL`
`token`	(character) we do not recommend passing your token here as a string. Either pass it using `Sys.getenv()` or save your token as the env var `PROOF_TOKEN` and then passing nothing to this param and we'll find it