cromwell_validate: Validates a workflow for submission

In FredHutch/fh.wdlR: Convenience Tools for Managing WDL Workflows via Cromwell

Validates a workflow for submission

Description

Validates a workflow for submission

Usage

cromwell_validate(wdl, all_inputs = NULL, url = cw_url(), token = NULL)

Arguments

wdl	Local path to the wdl file describing the workflow. (Required)
all_inputs	Local path to the json containing ALL the inputs the parameters to use with the workflow - if a batch and parameters json are present they must first be combined. (Optional)
url	(character) base url for your Cromwell server. optional. if not supplied set the url as the env var CROMWELLURL
token	(character) we do not recommend passing your token here as a string. Either pass it using Sys.getenv() or save your token as the env var PROOF_TOKEN and then passing nothing to this param and we'll find it

Value

a list with validation details

Important

Requires valid Cromwell server URL to be set. See cromwell_settings

Author(s)

Amy Paguirigan, Scott Chamberlain

FredHutch/fh.wdlR documentation built on March 26, 2024, 8:40 p.m.