FrietzeLabUVM/peaksat: Peak saturation processing and analysis

An R package that coordinates the computationally instense task of processing bam files for peak saturation analsysis. This process entails the iterative downsampling and peak calling using samtools and MACS2. Visualization and analysis functions are also provided to interpret processing results.

Getting started

Package details

Bioconductor views ChIPSeq Sequencing Software Visualization
Maintainer
LicenseMIT + file LICENSE
Version1.0.4
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("FrietzeLabUVM/peaksat")
FrietzeLabUVM/peaksat documentation built on Oct. 20, 2023, 11:13 a.m.