estimate_depth.log: Estimate read depth required to reach target peaks based on...

In FrietzeLabUVM/peaksat: Peak saturation processing and analysis

Estimate read depth required to reach target peaks based on logistic regression.

Description

Estimate read depth required to reach target peaks based on logistic regression.

Usage

estimate_depth.log(
  cnt_dt,
  target_peaks = NULL,
  min_read_count = 5e+06,
  max_read_count = 1e+08
)

Arguments

cnt_dt	data.table from load_counts
target_peaks	The estimated number of peaks at saturation.
min_read_count	Read counts below this value are not used when fitting regression
max_read_count	Read counts above this value are not used when fitting regression

Value

A named list. Item 1 is a data.table containing estimates for saturation. Item 2 is a list of plots showing regression curves.

FrietzeLabUVM/peaksat documentation built on Oct. 20, 2023, 11:13 a.m.