estimate_depth.linear: Title

In FrietzeLabUVM/peaksat: Peak saturation processing and analysis

Title

Description

Title

Usage

estimate_depth.linear(
  cnt_dt,
  target_peaks = NULL,
  min_read_count = 5e+06,
  max_read_count = 1e+08
)

Arguments

max_read_count

Examples

psc = peaksat_config("~/R/peaksat_paper/peaksat_outputs/peak_saturation_10A_H4ac_seq1_only")
cnt_dt = load_counts(psc)
est_res = estimate_depth.linear(cnt_dt[grepl("H4K8AC", sample)], target_peaks = 26e3, min_read_count = 10e6)
est_res$plots
est_res$estimates
est_res$estimates[, .(sample, target_Mreads = saturation_read_count/1e6, current_Mreads = current_read_count/1e6, needed_Mreads = saturation_read_count/1e6-current_read_count/1e6)]

FrietzeLabUVM/peaksat documentation built on Oct. 20, 2023, 11:13 a.m.