peaksat_config: peaksat_config
In FrietzeLabUVM/peaksat: Peak saturation processing and analysis
View source: R/peaksat_config.R
peaksat_config R Documentation
peaksat_config
Description
peaksat_config
Usage
peaksat_config(
out_dir = getOption("PS_OUTDIR", file.path(getwd(), "peak_saturation")),
stat = valid_stats$qValue,
stat_value = 0.01,
is_PE = FALSE,
macs2_path = get_macs2_path(),
samtools_path = get_samtools_path(),
submit_script = get_submit_script(),
job_scheduler = "SGE",
noModel = FALSE
)
Arguments
out_dir
Examples
psc = peaksat_config()
call_submit_script(psc, "treat.bam", "ctrl.bam")
FrietzeLabUVM/peaksat documentation built on Oct. 2, 2024, 7:07 p.m.
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View source: R/peaksat_config.R
| peaksat_config | R Documentation |
peaksat_config
Description
peaksat_config
Usage
peaksat_config(
out_dir = getOption("PS_OUTDIR", file.path(getwd(), "peak_saturation")),
stat = valid_stats$qValue,
stat_value = 0.01,
is_PE = FALSE,
macs2_path = get_macs2_path(),
samtools_path = get_samtools_path(),
submit_script = get_submit_script(),
job_scheduler = "SGE",
noModel = FALSE
)
Arguments
out_dir |
Examples
psc = peaksat_config()
call_submit_script(psc, "treat.bam", "ctrl.bam")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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