Man pages for FrietzeLabUVM/ssvQC
QC for enrichment based NGS
| bfcif | bfcif |
| ClusteredSignal | ClusteredSignal |
| ClusteredSignal-class | ClusteredSignal |
| ClusteredSignal.fromConfig | ClusteredSignal.fromConfig |
| ClusteredSignal.null | ClusteredSignal.null |
| digest_args | digest_args |
| dot-parse_config_header | .parse_config_header |
| dot-prepFeatures | Internal function for ssvQC.prepFeatures |
| dot-save_config | internal function used by QcConfig.save_config... |
| dot-show_QcConfig | .show_QcConfig |
| dot-show_ssvQC | internal show function for ssvQC |
| get_args | get_args |
| get_feature_file_load_function | get_feature_file_load_function |
| get_mapped_reads | get_mapped_reads |
| guess_feature_file_format | guess_feature_file_format |
| guess_read_mode | guess_read_mode |
| harmonize_seqlengths | Forces seqlengths in GRanges to be that in header of bam_file |
| make_anno_dt | make_anno_dt |
| make_anno_grs | make_anno_grs |
| make_assign_dt | make_assign_dt |
| make_centered_query_gr | make_centered_query_gr |
| make_dt | make_dt |
| make_feature_as_signal_dt | make_feature_as_signal_dt |
| make_feature_overlap_signal_profiles | make_feature_overlap_signal_profiles |
| make_fq_dt | make_fq_dt |
| make_frip_dt | make_frip_dt |
| make_peak_dt | make_peak_dt |
| make_scc_dt | make_scc_dt |
| make_scc_dt.single | make_scc_dt.single |
| parse_fetch_options | parse_fetch_options |
| plot_anno_overlap | plot_anno_overlap |
| plot_feature_comparison | plot_feature_comparison |
| plot_feature_overlap_signal_profiles | plot_feature_overlap_signal_profiles |
| plot_fq_dt | plot_fq_dt |
| plot_frip_dt | plot_frip_dt |
| plot_scc_dt | plot_scc_dt |
| plot_signals | plot_signals |
| QcConfig | QcConfig |
| QcConfigFeatures | QcConfigFeatures |
| QcConfigFeatures.GRanges | QcConfigFeatures.GRanges |
| QcConfigSignal | QcConfigSignal |
| QcPlot-class | QcPlot |
| QcScaleColor-methods | QcScaleColor |
| sampleCap | sampleCap |
| ssv_mclapply | ssv_mclapply |
| ssvQC | ssvQC |
| ssvQC.removeFeatures | ssvQC.selectFeatures |
| ssvQC.save_config | ssvQC.save_config |
| ssvQC.selectClusters | ssvQC.removeClusters |
| sync_height | sync_height |
| sync_width | sync_width |
| write_bed_frip | write_bed_frip |
| write_bed_overlaps | write_bed_overlaps |
| write_ssvQC | write_ssvQC.per_peak |
