plot_fq_dt: plot_fq_dt

In FrietzeLabUVM/ssvQC: QC for enrichment based NGS

plot_fq_dt

Description

plot_fq_dt

Usage

plot_fq_dt(fq_dt)

Arguments

fq_dt

output of make_fq_dt

Value

a ggplot shoing read counts from fastq files

Examples

fq_files = dir("inst/extdata",
  pattern = "(fq$)|(fq.gz$)|(fastq$)|(fastq.gz$)",
  full.names = TRUE)
#no idea why this make_fq_dt example won't run
#fq_dt = make_fq_dt(fq_files,
#   fastq_names = c("4_reads_fq", "4_reads_gz", "5_reads_fq", "5_reads_gz"))
#plot_fq_dt(fq_dt)

FrietzeLabUVM/ssvQC documentation built on March 25, 2024, 12:24 a.m.