make_anno_grs: make_anno_grs
In FrietzeLabUVM/ssvQC: QC for enrichment based NGS
View source: R/functions_make.R
make_anno_grs R Documentation
make_anno_grs
Description
Loads a GTF file and processes it to list of GRanges suitable for serial
annotation by make_feature_as_signal_dt.
Usage
make_anno_grs(gtf_file)
Arguments
gtf_file
A gtf or gtf.gz file from GENCODE Other sources may work but
have not been tested.
Details
Output is intended for use with make_feature_as_signal_dt
Value
a named list of GRanges where each corresponds to an annotated
feature type
Examples
gtf_file = system.file(package = "seqqc", "extdata/gencode.v35.annotation.at_peaks.gtf")
make_anno_grs(gtf_file)
FrietzeLabUVM/ssvQC documentation built on March 25, 2024, 12:24 a.m.
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View source: R/functions_make.R
| make_anno_grs | R Documentation |
make_anno_grs
Description
Loads a GTF file and processes it to list of GRanges suitable for serial
annotation by make_feature_as_signal_dt.
Usage
make_anno_grs(gtf_file)
Arguments
gtf_file |
A gtf or gtf.gz file from GENCODE Other sources may work but have not been tested. |
Details
Output is intended for use with make_feature_as_signal_dt
Value
a named list of GRanges where each corresponds to an annotated feature type
Examples
gtf_file = system.file(package = "seqqc", "extdata/gencode.v35.annotation.at_peaks.gtf")
make_anno_grs(gtf_file)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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