eds.test: eds.test

In G-Thomson/gthor: R package of things I find useful in my PhD work

Description

eds.test

Usage

eds.test(data, Reference_gene, Measured_genes, Experimental_conditions = NULL,
  Replicate_id = "_")

Arguments

data	This is a list from the eds.summary function
Reference_gene	The name of your reference gene that you are measuring relative expression against as a character
Measured_genes	A vector of the genes you are measuing as characters
Experimental_conditions	If you have multiple experimental conditions that you want to compare this is a character vector of those conditions. By default it is NULL

Value

This is the function that produces the results. Essentially it uses the ddCT method to produce a list of dataframes, one for each gene. Each dataframe contains the mean, sd and se for each sample. There is also a "Gene and Condition" tag to make plotting easy.

Examples

Measured_genes <- c("GOI_1", "GOI_2")
eds.test(test2, "PDF2", Measured_genes, Experimental_conditions = Experimental_conditions)

G-Thomson/gthor documentation built on May 6, 2019, 5:08 p.m.