annotation_data: External Annotation.

Description Usage Format Source

Description

A dataset containing external information that can be used to tune the weights in the polygenic gene score using boosted regression tree models.

Usage

1

Format

A data frame with 927 rows and 48 variables:

SNP_ID

SNP rs ID

BMI_beta_adj

Standardized regression coefficient for association of a SNP and BMI obtained from external consortium GIANT

CARDIOGRAM_beta_adj

Standardized regression coefficient for association of a SNP and CAD obtained from external consortium CARDIOGRAM

DIAGRAM_beta_adj

Standardized regression coefficient for association of a SNP and T2D obtained from external consortium DIAGRAM

HDL_beta_adj

Standardized regression coefficient for association of a SNP and HDL obtained from external consortium Global Lipids Genetics Consortium Results

Source

http://www.diagram-consortium.org http://csg.sph.umich.edu/abecasis/public/lipids2013/ http://www.cardiogramplusc4d.org/ http://portals.broadinstitute.org/collaboration/giant/index.php/GIANT_consortium


GMELab/GraBLD documentation built on May 4, 2019, 3:20 p.m.