Description Usage Arguments Value Examples
The function standardizes a genotype data such that for each SNP the mean is 0 and standard deviation is 1.
1 | full_normal_geno(geno_raw, max_size = 1e+05, NAval = NA)
|
geno_raw |
the genotype matrix assuming each row is the individual and each column is the SNP. |
max_size |
an integer for the maximum size of SNPs to be standardized at a time, the default is 100000. This option can be ignored for data with less than 1 million SNPs. |
NAval |
the missing value used in the output data matrix. The default is NA, for use with
PLINK, set |
a data matrix of standardized genotypes.
1 2 | data(geno)
norm_geno <- full_normal_geno(geno_raw = geno)
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