computeCellCounts: Get cell counts with metadata
In GabrielHoffman/dreamlet: Scalable differential expression analysis of single cell transcriptomics datasets with complex study designs
computeCellCounts R Documentation
Get cell counts with metadata
Description
Get cell counts with metadata for each sample
Usage
computeCellCounts(sce, annotation, sampleIDs)
Arguments
sce
SingleCellExperiment
annotation
string indicating column in colData(sce) storing cell type annotations
sampleIDs
string indicating column in colData(sce) storing sample identifers
Value
matrix storing cell counts
Examples
library(muscat)
library(SingleCellExperiment)
data(example_sce)
counts <- computeCellCounts(example_sce, "cluster_id", "sample_id")
counts[1:4, 1:4]
GabrielHoffman/dreamlet documentation built on Nov. 23, 2024, 12:28 a.m.
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| computeCellCounts | R Documentation |
Get cell counts with metadata
Description
Get cell counts with metadata for each sample
Usage
computeCellCounts(sce, annotation, sampleIDs)
Arguments
sce |
|
annotation |
string indicating column in |
sampleIDs |
string indicating column in |
Value
matrix storing cell counts
Examples
library(muscat)
library(SingleCellExperiment)
data(example_sce)
counts <- computeCellCounts(example_sce, "cluster_id", "sample_id")
counts[1:4, 1:4]
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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