| .compositePosteriorTest |
Source code
|
| .compute_colsum_for_block |
Source code
|
| .compute_colsum_for_grid_row |
Source code
|
| .n_cells |
Source code
|
| .pb |
Source code
|
| .pbWeights_ncells |
Source code
|
| .plotCellComposition |
Source code
|
| .read_matrix_block |
Source code
|
| [,dreamletProcessedData,ANY,ANY,ANY-method |
Man page
|
| [,dreamletProcessedData,dreamletProcessedData-method |
Man page
|
| [,dreamletResult,ANY,ANY,ANY-method |
Man page
|
| [,dreamletResult,dreamletResult-method |
Man page
|
| aggregateNonCountSignal |
Man page
Source code
|
| aggregateToPseudoBulk |
Man page
Source code
|
| aggregateVar |
Man page
Source code
|
| as.dreamletResult |
Man page
Source code
|
| assay,dreamletProcessedData,ANY-method |
Man page
|
| assay,dreamletProcessedData,dreamletProcessedData-method |
Man page
|
| assay,dreamletResult,ANY-method |
Man page
|
| assay,dreamletResult,dreamletResult-method |
Man page
|
| assay,vpDF,ANY-method |
Man page
|
| assay,vpDF,vpDF-method |
Man page
|
| assayNames,dreamletProcessedData,dreamletProcessedData-method |
Man page
|
| assayNames,dreamletProcessedData-method |
Man page
|
| assayNames,dreamletResult,dreamletResult-method |
Man page
|
| assayNames,dreamletResult-method |
Man page
|
| assayNames,vpDF,vpDF-method |
Man page
|
| assayNames,vpDF-method |
Man page
|
| buildClusterTreeFromPB |
Man page
Source code
|
| cellCounts |
Man page
Source code
|
| cellSpecificityValues-class |
Man page
|
| cellTypeSpecificity |
Man page
Source code
|
| checkFormula |
Man page
Source code
|
| coefNames |
Man page
|
| coefNames,dreamletResult-method |
Man page
|
| colData,dreamletProcessedData-method |
Man page
|
| colData<-,dreamletProcessedData,ANY-method |
Man page
|
| colsum2 |
Source code
|
| colsum_beachmat |
Source code
|
| colsum_beachmat_matrix |
Source code
|
| colsum_beachmat_sparseMatrix |
Source code
|
| compositePosteriorTest |
Man page
Source code
|
| computeCellCounts |
Man page
Source code
|
| computeLogCPM |
Man page
Source code
|
| computeNormCounts |
Man page
Source code
|
| compute_ugroup |
Source code
|
| create_idxlist |
Source code
|
| details |
Man page
|
| details,dreamletProcessedData-method |
Man page
|
| details,dreamletResult-method |
Man page
|
| details,vpDF-method |
Man page
|
| diffVar,dreamletResult,dreamletResult-method |
Man page
|
| diffVar,dreamletResult-method |
Man page
|
| dreamlet |
Man page
|
| dreamlet,dreamletProcessedData-method |
Man page
|
| dreamletCompareClusters |
Man page
Source code
|
| dreamletProcessedData-class |
Man page
|
| dreamletResult-class |
Man page
|
| dreamlet_mash_result-class |
Man page
|
| dropRedundantTerms |
Man page
Source code
|
| equalFormulas |
Man page
Source code
|
| extractData |
Man page
|
| extractData,dreamletProcessedData,character-method |
Man page
|
| extractData,dreamletProcessedData-method |
Man page
|
| fitVarPart |
Man page
|
| fitVarPart,dreamletProcessedData-method |
Man page
|
| getExprGeneNames |
Man page
Source code
|
| getTreat,dreamletResult,dreamletResult-method |
Man page
|
| getTreat,dreamletResult-method |
Man page
|
| getVarForCellType |
Source code
|
| getVarFromCounts |
Source code
|
| getVarList |
Source code
|
| get_metadata_aggr_means |
Source code
|
| get_offset |
Source code
|
| isFullRank |
Source code
|
| merge_metadata |
Source code
|
| meta_analysis |
Man page
Source code
|
| metadata,dreamletProcessedData,dreamletProcessedData-method |
Man page
|
| metadata,dreamletProcessedData-method |
Man page
|
| outlier |
Man page
Source code
|
| outlierByAssay |
Man page
Source code
|
| pbWeights |
Man page
Source code
|
| plotBeeswarm |
Man page
Source code
|
| plotCellComposition |
Man page
|
| plotCellComposition,SingleCellExperiment-method |
Man page
|
| plotCellComposition,data.frame-method |
Man page
|
| plotCellComposition,matrix-method |
Man page
|
| plotForest |
Man page
|
| plotForest,dreamletResult-method |
Man page
|
| plotForest,dreamlet_mash_result-method |
Man page
|
| plotGeneHeatmap |
Man page
|
| plotGeneHeatmap,dreamletResult,dreamletResult-method |
Man page
|
| plotGeneHeatmap,dreamletResult-method |
Man page
|
| plotHeatmap |
Man page
|
| plotHeatmap,cellSpecificityValues,cellSpecificityValues-method |
Man page
|
| plotHeatmap,cellSpecificityValues-method |
Man page
|
| plotHeatmap,data.frame,data.frame-method |
Man page
|
| plotHeatmap,data.frame-method |
Man page
|
| plotHeatmap,matrix,matrix-method |
Man page
|
| plotHeatmap,matrix-method |
Man page
|
| plotPCA |
Man page
|
| plotPCA,list-method |
Man page
|
| plotPercentBars,cellSpecificityValues,cellSpecificityValues-meth |
Man page
|
| plotPercentBars,cellSpecificityValues-method |
Man page
|
| plotPercentBars,vpDF,vpDF-method |
Man page
|
| plotPercentBars,vpDF-method |
Man page
|
| plotProjection |
Man page
Source code
|
| plotVarPart,DataFrame,DataFrame-method |
Man page
|
| plotVarPart,DataFrame-method |
Man page
|
| plotViolin |
Man page
|
| plotViolin,cellSpecificityValues,cellSpecificityValues-method |
Man page
|
| plotViolin,cellSpecificityValues-method |
Man page
|
| plotVolcano |
Man page
|
| plotVolcano,MArrayLM,MArrayLM-method |
Man page
|
| plotVolcano,MArrayLM-method |
Man page
|
| plotVolcano,dreamlet_mash_result,dreamlet_mash_result-method |
Man page
|
| plotVolcano,dreamlet_mash_result-method |
Man page
|
| plotVolcano,list,list-method |
Man page
|
| plotVolcano,list-method |
Man page
|
| plotVoom |
Man page
|
| plotVoom,EList-method |
Man page
|
| plotVoom,dreamletProcessedData,dreamletProcessedData-method |
Man page
|
| plotVoom,dreamletProcessedData-method |
Man page
|
| plotVoom,list,list-method |
Man page
|
| print,dreamletProcessedData,dreamletProcessedData-method |
Man page
|
| print,dreamletProcessedData-method |
Man page
|
| print,dreamletResult,dreamletResult-method |
Man page
|
| print,dreamletResult-method |
Man page
|
| processAssays |
Man page
Source code
|
| processOneAssay |
Man page
Source code
|
| removeConstantTerms |
Man page
Source code
|
| residuals,dreamletResult,dreamletResult-method |
Man page
|
| residuals,dreamletResult-method |
Man page
|
| rowWeightedVarsMatrix |
Source code
|
| run_mash |
Man page
Source code
|
| seeErrors |
Man page
|
| seeErrors,dreamletProcessedData-method |
Man page
|
| seeErrors,dreamletResult-method |
Man page
|
| seeErrors,vpDF-method |
Man page
|
| show,dreamletProcessedData,dreamletProcessedData-method |
Man page
|
| show,dreamletProcessedData-method |
Man page
|
| show,dreamletResult,dreamletResult-method |
Man page
|
| show,dreamletResult-method |
Man page
|
| sortCols,vpDF-method |
Man page
|
| stackAssays |
Man page
Source code
|
| tabToMatrix |
Man page
Source code
|
| topTable,dreamletResult,dreamletResult-method |
Man page
|
| topTable,dreamletResult-method |
Man page
|
| vpDF-class |
Man page
|
| zenith_gsa,dreamletResult,GeneSetCollection,ANY-method |
Man page
|
| zenith_gsa,dreamletResult,GeneSetCollection-method |
Man page
|
| zenith_gsa,dreamlet_mash_result,GeneSetCollection,ANY-method |
Man page
|
| zenith_gsa,dreamlet_mash_result,GeneSetCollection-method |
Man page
|
