seeErrors-methods: Get error text

In GabrielHoffman/dreamlet: Scalable differential expression analysis of single cell transcriptomics datasets with complex study designs

Get error text

Description

Get error text

Usage

seeErrors(obj)

## S4 method for signature 'dreamletResult'
seeErrors(obj)

## S4 method for signature 'dreamletProcessedData'
seeErrors(obj)

## S4 method for signature 'vpDF'
seeErrors(obj)

Arguments

obj	A dreamletResult object

Value

tibble storing error text

Examples

library(muscat)
library(SingleCellExperiment)

data(example_sce)

# create pseudobulk for each sample and cell cluster
pb <- aggregateToPseudoBulk(example_sce,
  assay = "counts",
  cluster_id = "cluster_id",
  sample_id = "sample_id",
  verbose = FALSE
)

# voom-style normalization
res.proc <- processAssays(pb, ~group_id)

# Differential expression analysis within each assay,
# evaluated on the voom normalized data
res.dl <- dreamlet(res.proc, ~group_id)

# show errors
# but none are reported
res.err = seeErrors(res.dl)

GabrielHoffman/dreamlet documentation built on July 20, 2024, 9:03 p.m.