Files in GabrielHoffman/pinnacle
pinnacle: Gene set enrichment analysis based on genomic intervals

DESCRIPTION
NAMESPACE
NEWS
R/compute_enrichment.R R/correlation_decomp.R R/distance_functions.R R/eval_annotations.R R/fastlmm.R R/get_SigmaGamma.R R/glslr.R R/lmm_R.R R/pinnacle-internal.R R/pinnacle.R R/plots.R R/process_correlations.R R/selectDecay.R R/untitled.R README.md
TODO
inst/unitTests/test_correlationSquaredDecomp.R inst/unitTests/test_gls.R man/ESS.Rd man/correlationDecomp.Rd man/correlationSquaredDecomp.Rd man/dot-getScalingMatrixFromWeights.Rd man/dot-get_SigmaGamma.Rd man/dot-projectionOntoExistingSpace.Rd man/dot-weight_fxn_internal.Rd man/evalCorrelationDecomp.Rd man/getCorrInGeneSet.Rd man/getGeneMapping.Rd man/getPeakGeneDistances.Rd man/glsCovList-class.Rd man/glsCovariance-class.Rd man/glslr-class.Rd man/glslr.Rd man/glslrApply.Rd man/makeImageRect.Rd man/pinnacle.Rd man/pinnacleEnrich.Rd man/plotCorrDistance.Rd man/plotCorrTriangle.Rd man/plotDistanceWeights.Rd man/plotEnrichment.Rd man/plotPinnacleResult.Rd man/print-glsCovList.Rd man/print-glsCovariance.Rd man/print-glslr.Rd man/print-spectralDecomp.Rd man/projectionLMM.Rd man/setDecompRank-methods.Rd man/setDecompRank.Rd man/show-glsCovList.Rd man/show-glsCovariance.Rd man/show-glslr.Rd man/show-spectralDecomp.Rd man/spectralDecomp-class.Rd man/summary-glslr-method.Rd man/summary_glslr-class.Rd man/vcov-methods.Rd man/weight_fxn.Rd
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/fastlmm.cpp
test_corr.R tests/runTests.R vignettes/atac_local_corr.Rmd vignettes/local_correlation.Rmd vignettes/pinnacle.Rmd vignettes/pinnacle_geuvadis.Rmd
GabrielHoffman/pinnacle documentation built on May 3, 2019, 3:02 p.m.