Man pages for GabrielHoffman/pinnacle
Gene set analysis accounting for gene-gene correlations

getJaccardMatrixGet pairwise Jaccard similarity between genesets
getJaccardMatrix-GeneSetCollectionGet pairwise Jaccard similarity between genesets
getJaccardMatrix-sparseMatrixGet pairwise Jaccard similarity between genesets
heatplotPlot gene sets in two dimensions
pinnacleEvaluate Gene Set Analysis with Pinnacle
plot_mdsPlot gene sets in two dimensions
recodeToDataTableRecode GeneSetCollection to data.table
recodeToListRecode GeneSetCollection to list used by limma
recodeToList-GeneSetCollectionRecode GeneSetCollection to list used by limma
recodeToSparseMatrixRecode GeneSetCollection to sparseMatrix
recodeToSparseMatrix-GeneSetCollectionRecode GeneSetCollection to sparseMatrix
GabrielHoffman/pinnacle documentation built on May 29, 2022, 8 p.m.