plot_mds: Plot gene sets in two dimensions
In GabrielHoffman/pinnacle: Gene set analysis accounting for gene-gene correlations
View source: R/recodeGeneSet.R
plot_mds R Documentation
Plot gene sets in two dimensions
Description
Plot gene sets in two dimensions based on Jaccard distance
Usage
plot_mds(gsc, res, value = "-log10(p.shift)", zlim = c(0, NA))
Arguments
gsc
GeneSetCollection object
res
data.frame with score for each gene set
value
indicate which columns of res to use to color points
zlim
limits of colors. c(0,NA) indicates a range from 0 to the largest observed value
GabrielHoffman/pinnacle documentation built on May 29, 2022, 8 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/recodeGeneSet.R
| plot_mds | R Documentation |
Plot gene sets in two dimensions
Description
Plot gene sets in two dimensions based on Jaccard distance
Usage
plot_mds(gsc, res, value = "-log10(p.shift)", zlim = c(0, NA))
Arguments
gsc |
GeneSetCollection object |
res |
data.frame with score for each gene set |
value |
indicate which columns of res to use to color points |
zlim |
limits of colors. c(0,NA) indicates a range from 0 to the largest observed value |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.