heatplot: Plot gene sets in two dimensions
In GabrielHoffman/pinnacle: Gene set analysis accounting for gene-gene correlations
View source: R/recodeGeneSet.R
heatplot R Documentation
Plot gene sets in two dimensions
Description
Plot gene sets in two dimensions based on Jaccard distance
Usage
heatplot(gsc, df_GeneMap, coef, setOverlap = 2, bicluster = TRUE, zlim = NULL)
Arguments
gsc
GeneSetCollection object
df_GeneMap
result from getGeneMapping()
coef
indicate contrast column in df_GeneMap
setOverlap
keep genes present in at least this many genes sets
bicluster
apply clustering to rows and columns before plotting
zlim
scalar. specify max value for color scale
GabrielHoffman/pinnacle documentation built on May 29, 2022, 8 p.m.
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View source: R/recodeGeneSet.R
| heatplot | R Documentation |
Plot gene sets in two dimensions
Description
Plot gene sets in two dimensions based on Jaccard distance
Usage
heatplot(gsc, df_GeneMap, coef, setOverlap = 2, bicluster = TRUE, zlim = NULL)
Arguments
gsc |
GeneSetCollection object |
df_GeneMap |
result from getGeneMapping() |
coef |
indicate contrast column in df_GeneMap |
setOverlap |
keep genes present in at least this many genes sets |
bicluster |
apply clustering to rows and columns before plotting |
zlim |
scalar. specify max value for color scale |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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