GabrielHoffman/pinnacle
Gene set analysis accounting for gene-gene correlations

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GabrielHoffman/pinnacle: Gene set analysis accounting for gene-gene correlations
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Gene set analysis accounting for gene-gene correlations

getJaccardMatrixGet pairwise Jaccard similarity between genesets
getJaccardMatrix-GeneSetCollectionGet pairwise Jaccard similarity between genesets
getJaccardMatrix-sparseMatrixGet pairwise Jaccard similarity between genesets
heatplotPlot gene sets in two dimensions
pinnacleEvaluate Gene Set Analysis with Pinnacle
plot_mdsPlot gene sets in two dimensions
recodeToDataTableRecode GeneSetCollection to data.table
recodeToListRecode GeneSetCollection to list used by limma
recodeToList-GeneSetCollectionRecode GeneSetCollection to list used by limma
recodeToSparseMatrixRecode GeneSetCollection to sparseMatrix
recodeToSparseMatrix-GeneSetCollectionRecode GeneSetCollection to sparseMatrix
GabrielHoffman/pinnacle documentation built on May 29, 2022, 8 p.m.

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